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BY 4.0 license Open Access Published by De Gruyter July 18, 2022

On computation of the reduced reverse degree and neighbourhood degree sum-based topological indices for metal-organic frameworks

  • Vignesh Ravi and Kalyani Desikan EMAIL logo

Abstract

Metal-organic frameworks (MOFs) are permeable substances with a high porosity volume, excellent chemical stability, and a distinctive shape created by strong interactions between metal ions and organic ligands. Work on the synthesis, structures, and properties of numerous MOFs demonstrates their usefulness in a variety of applications, including energy storage devices with good electrode materials, gas storage, heterogeneous catalysis, and chemical assessment. The physico-chemical characteristics of the chemical compounds in the underlying molecular graph or structure are predicted by a topological index, which is a numerical invariant. In this article, we look at two different metal-organic frameworks in terms of the number of layers, as well as metal and organic ligands. We compute the reduced reverse degree-based topological indices and some closed neighbourhood degree sum-based topological indices for these frameworks.

1 Introduction

Chemical reaction framework is a branch of applied mathematics aimed at replicating the behaviour of real-world chemical structures. Since its inception in the 19th century, it has grown in popularity among scientists, owing to advances in organic and theoretical chemistry.

Cheminformatics is a growing field in which quantitative structure-activity relationship and quantity structure-property relationship aid in the prediction of bioactivities and attributes of chemical compounds (Aslam et al., 2017; Ahmad et al., 2017; Doley et al., 2020). Physico-chemical characteristics and topological indices have been used to predict the bioactivity of organic molecules (Gutman, 2013).

The vertices in a chemical graph denote atoms or compounds, while the links depict the chemical bonding between them. Topological indices are numerical graph invariants that characterise the structure of the graph. The degree of a vertex is indicated by d u or d ( u ) (West, 2001) and it denotes the count of edges that are incident upon this vertex u.

Mondal et al. (2019) introduced some neighbourhood versions of degree-based indices such as Forgotten topological index F N , second Zagreb index M 2 , and hyper Zagreb index HM N . Further, Mondal et al. (2021a) introduced six new neighbourhood degree sum indices, namely, ND1, ND2, ND3, ND4, ND5, and ND6. Many researchers are working on the QSPR analysis of various molecules (Al-Fahemi et al., 2014; Devillers and Balaban, 1999; Doley et al., 2020; Furtula and Gutman, 2015; Furtula et al., 2018; Hosamani, 2016, 2017; Mondal et al., 2021a,b), since it is an economically efficient mechanism to test compounds instead of testing them in a wet lab. Moreover, QSPR analysis can be used to develop models that can forecast properties or activities of organic chemical substances.

2 Preliminaries

Let G be a graph and v be a vertex of G . Kulli (2018) introduced the concept of reverse vertex degree ( v ) , defined as:

(1) ( v ) = Δ ( G ) d ( v ) + 1

where Δ(G) is the maximum degree of the graph G and d(v) is the degree of the vertex v .

Inspired by this definition, Ravi et al. (2021b) defined the reduced reverse degree as:

(2) ( v ) = Δ ( G ) d ( v ) + 2

This was introduced to study the impact of the reduced reverse degree in the QSPR analysis. Further, they defined the reduced reverse degree-based versions of Zagreb indices, forgotten index, atom bond connectivity index, arithmetic index, and analysed their relationship with the physico-chemical properties of certain COVID-19 drugs.

The reduced reverse degree versions of the aforesaid topological indices are:

(3) RRM 1 ( G ) = u v E [ RR ( u ) + RR ( v ) ]

(4) RRM 2 ( G ) = u v E [ RR ( u ) RR ( v ) ]

(5) RRHM 1 ( G ) = u v E [ RR ( u ) + RR ( v ) ] 2

(6) RRHM 2 ( G ) = u v E [ RR ( u ) RR ( v ) ] 2

(7) RRF ( G ) = u v E [ RR ( u ) 2 + RR ( v ) 2 ]

(8) RRABC ( G ) = u v E RR ( u ) + RR ( v ) 2 RR ( u ) RR ( v )

(9) RRGA ( G ) = u v E 2 RR ( u ) RR ( v ) RR ( u ) + RR ( v )

Ravi and co-authors proposed open (Ravi and Desikan, 2021a) and closed (Ravi and Desikan, 2022) neighbourhood degree sum-based topological indices. They computed those indices for the graphene structures and hyaluronic acid curcumin conjugates along with the QSPR analysis of octane isomers. The closed neighbourhood indices introduced by them are as follows:

(10) SK N c ( G ) = u v E ( G ) δ c [ u ] + δ c [ v ] 2

(11) SK 1 N c ( G ) = u v E ( G ) δ c [ u ] δ c [ v ] 2

(12) SK 2 N c ( G ) = u v E ( G ) δ c [ u ] + δ c [ v ] 2 2

(13) mR N c ( G ) = u v E ( G ) 1 max { δ c [ u ] , δ c [ v ] }

(14) ISI N c ( G ) = u v E ( G ) δ c [ u ] δ c [ v ] δ c [ u ] + δ c [ v ]

(15) RSK N c ( G ) = u v E ( G ) 2 δ c [ u ] + δ c [ v ]

(16) RSK 1 N c ( G ) = u v E ( G ) 2 δ c [ u ] δ c [ v ]

(17) RSK 2 N c ( G ) = u v E ( G ) 2 δ c [ u ] + δ c [ v ] 2

(18) RmR N c ( G ) = u v E ( G ) [ max { δ c [ u ] , δ c [ v ] } ]

(19) RISI N c ( G ) = u v E ( G ) δ c [ u ] + δ c [ v ] δ c [ u ] δ c [ v ]

where δ c [ u ] = v N G ( u ) d ( v ) ] + d ( u ) , where N G (u) represents the open neighbourhood of the vertex u .

MOFs are used as catalysts in the preparation of numerous nanostructured materials (Yap et al., 2017). Wasson et al. (2008) gave the idea of linker competition within a metal-organic framework for structural insights. MOFs have crucial physical and chemical characteristics, such as changing organic ligands (Yin et al., 2015), transplanting (Hwang et al., 2008), post-synthetic ligand, and ion interchange (Kim et al., 2012), as well as impregnating appropriate effective materials (Thornton et al., 2009).

Various researchers (Agha et al., 2021, Ahmed and Jhung, 2014; Awais et al., 2020; Chu et al., 2020; Hong et al., 2020; Mumtaz et al., 2021; Xu et al., 2020; Zhao et al., 2021) have proposed different topological indices for the metal-organic frameworks.

In MOFs, the larger nodes correspond to zeolite imidazole (zinc-based metal), while the smaller nodes correspond to organic ligands. Between metals and organic ligands, as well between two organic ligands and two metals, the edges serve as connecting links. Now, we build two MOFs from the basic MOF by increasing the number of levels or dimensions that are made up of metals and organic ligands, with each new level or dimension adding two layers to the preceding level or dimension. For details on MOFs, refer Koo et al. (2017). The first metal-organic framework is created by forming links between the metals of two consecutive levels of the MOF, such that two metals in lower level are connected with a metal in the next level. Likewise, we create the second metal-organic framework by forming links among the organic ligands of two consecutive levels of the MOF, such that the two organic ligands in lower level are connected with an organic ligand in the next level. Furthermore, we have |V(MOF1(t))| = |V(MOF2(t))| = 48t for both MOFs and |E(MOF1(t))| = |E(MOF2(t))| = 72t − 12 for both MO’s. Figure 1 shows the first and second metal-organic framework (MOF1(t) and MOF2(t)), for dimension t = 2. The figures of the first and second metal-organic frameworks are taken from the article by Awais et al. (2020).

Figure 1 
               First (a) and second (b) metal-organic frameworks of dimension 2.
Figure 1

First (a) and second (b) metal-organic frameworks of dimension 2.

3 Reduced reverse degree-based topological descriptors for the metal-organic frameworks

In this section, we compute the topological descriptors for both the metal-organic frameworks. We compute the reduced reverse degree-based versions of the Zagreb indices, forgotten index, atom bond connectivity index, and arithmetic index of the first and second metal-organic frameworks using the reduced reverse degree-based edge partitions.

Tables 1 and 2 provide the edge partitions of first and second metal-organic frameworks, respectively, based on the reduced reverse degrees of the end vertices.

Table 1

Reduced degree edge partitions of MOF1(t)

E i ( ( u ) , ( v ) ) Count
E 1 (6, 5) 36
E 2 (6, 4) 36t − 12
E 3 (6, 2) 24t − 24
E 4 (4, 2) 12t − 12
Table 2

Reduced degree edge partitions of MOF2(t)

E i ( ( u ) , ( v ) ) Count
E 1 (4, 3) 12t + 24
E 2 (4, 2) 12t + 12
E 3 (3, 3) 24t − 24
E 4 (3, 2) 12t − 12
E 5 (2, 2) 12t − 12

Let MOF1(t) be the first metal-organic framework of dimension t, where t ≥ 2.

Applying the reduced reverse degree-based edge partitions given in Table 1 in Eqs. 39, we get:

RRM 1 ( MOF 1 ( t ) ) = u v E [ RR ( u ) + RR ( v ) ] = u v E 1 [ 6 + 5 ] + u v E 2 [ 6 + 4 ] + u v E 3 [ 6 + 2 ] + u v E 4 [ 4 + 2 ] = 624 t + 12

RRM 2 ( MOF 1 ( t ) ) = u v E [ RR ( u ) RR ( v ) ] = u v E 1 [ 6 5 ] + u v E 2 [ 6 4 ] + u v E 3 [ 6 2 ] + u v E 4 [ 4 2 ] = 1 , 248 t + 408

RRHM 1 ( MOF 1 ( t ) ) = u v E [ RR ( u ) + RR ( v ) ] 2 = u v E 1 [ 6 + 5 ] 2 + u v E 2 [ 6 + 4 ] 2 + u v E 3 [ 6 + 2 ] 2 + u v E 4 [ 4 + 2 ] 2 = 5 , 568 t + 1 , 188

RRHM 2 ( MOF 1 ( t ) ) = u v E [ RR ( u ) RR ( v ) ] 2 = u v E 1 [ 6 5 ] 2 + u v E 2 [ 6 4 ] 2 + u v E 3 [ 6 2 ] 2 + u v E 4 [ 4 2 ] 2 = 24 , 960 t + 21 , 265

RRF ( MOF 1 ( t ) ) = u v E [ RR ( u ) 2 + RR ( v ) 2 ] = u v E 1 [ 6 2 + 5 2 ] + u v E 2 [ 6 2 + 4 2 ] + u v E 3 [ 6 2 + 2 2 ] + u v E 4 [ 4 2 + 2 2 ] = 3 , 072 t + 372

RRABC ( MOF 1 ( t ) ) = u v E RR ( u ) + RR ( v ) 2 RR ( u ) RR ( v ) = u v E 1 6 + 5 2 6 5 + u v E 2 6 + 4 2 6 4 + u v E 3 6 + 2 2 6 2 + u v E 4 4 + 2 2 4 2 = 2 9 30 + 30 3 t 10 3 + 45 2 t 45 2 5 ,

RRGA ( MOF 1 ( t ) ) = u v E 2 RR ( u ) RR ( v ) RR ( u ) + RR ( v ) = u v E 1 2 6 5 6 + 5 + u v E 2 2 6 4 6 + 4 + u v E 3 2 6 2 6 + 2 + u v E 4 2 4 2 4 + 2 = 4 90 30 + 198 6 t 66 6 + 165 3 t 165 3 + 110 2 t 110 2 55 ,

Let MOF2(t) be the second metal-organic framework of dimension t, for, t ≥ 2.

Applying the reduced reverse degree-based edge partitions given in Table 2 in Eqs. 39, we get:

RRM 1 ( MOF 2 ( t ) ) = u v E [ RR ( u ) + RR ( v ) ] = u v E 1 [ 4 + 3 ] + u v E 2 [ 4 + 2 ] + u v E 3 [ 3 + 3 ] + u v E 4 [ 3 + 2 ] + u v E 5 [ 2 + 2 ] = 408 t 12

RRM 2 ( MOF 2 ( t ) ) = u v E [ RR ( u ) RR ( v ) ] = u v E 1 [ 4 3 ] + u v E 2 [ 4 2 ] + u v E 3 [ 3 3 ] + u v E 4 [ 3 2 ] + u v E 5 [ 2 2 ] = 576 t + 48

RRHM 1 ( MOF 2 ( t ) ) = u v E [ RR ( u ) + RR ( v ) ] 2 = u v E 1 [ 4 + 3 ] 2 + u v E 2 [ 4 + 2 ] 2 + u v E 3 [ 3 + 3 ] 2 + u v E 4 [ 3 + 2 ] 2 + u v E 5 [ 2 + 2 ] 2 = 2 , 376 t + 252

RRHM 2 ( MOF 2 ( t ) ) = u v E [ RR ( u ) RR ( v ) ] 2 = u v E 1 [ 4 3 ] 2 + u v E 2 [ 4 2 ] 2 + u v E 3 [ 3 3 ] 2 + u v E 4 [ 3 2 ] 2 + u v E 5 [ 2 2 ] 2 = 5,064 t + 1 , 656

RRF ( MOF 2 ( t ) ) = u v E [ RR ( u ) 2 + RR ( v ) 2 ] = u v E 1 [ 4 2 + 3 2 ] + u v E 2 [ 4 2 + 2 2 ] + u v E 3 [ 3 2 + 3 2 ] + u v E 4 [ 3 2 + 2 2 ] + u v E 5 [ 2 2 + 2 2 ] = 1 , 224 t + 156

RRABC ( MOF 2 ( t ) ) = u v E RR ( u ) + RR ( v ) 2 RR ( u ) RR ( v ) = u v E 1 4 + 3 2 4 3 + u v E 2 4 + 2 2 4 2 + u v E 3 3 + 3 2 3 3 + u v E 4 3 + 2 2 3 2 + u v E 5 2 + 2 2 2 2 = 2 [ 15 t + 2 15 + 9 t 2 3 2 + 8 t 8 ]

RRGA ( MOF 2 ( t ) ) = u v E 2 RR ( u ) RR ( v ) RR ( u ) + RR ( v ) = u v E 1 2 4 3 4 + 3 + u v E 2 2 4 2 4 + 2 + u v E 3 2 3 3 3 + 3 + u v E 4 2 3 2 3 + 2 + u v E 5 2 2 2 2 + 2 = 4 60 3 t + 120 3 + 70 2 t + 315 t 42 6 t 42 6 315 35

4 Neighbourhood degree sum-based topological descriptors for the metal-organic frameworks

In this section, we compute the neighbourhood degree sum based topological descriptors for both the metal-organic frameworks. We compute the topological indices using the closed neighbourhood degree-sum of the end vertices. Tables 3 and 4 provide the edge partitions of first and second metal-organic frameworks based on the closed neighbourhood degree sum on the end vertices.

Table 3

Closed neighbourhood degree sum-based edge partitions of MOF1(t)

E i (δ u , δ v ) Count
E 1 (8, 9) 24
E 2 (9, 11) 12
E 3 (10, 12) 23
E 4 (10, 16) 24t − 12
E 5 (11, 22) 12
E 6 (12, 16) 12t − 24
E 7 (12, 22) 12t − 24
E 8 (14, 22) 12t − 12
E 9 (16, 22) 12t − 12
Table 4

Closed neighbourhood degree sum-based edge partitions of MOF2(t)

E i (δ u , δ v ) Count
E 1 (8, 9) 24
E 2 (9, 9) 12
E 3 (9, 11) 12t − 12
E 4 (9, 12) 12
E 5 (9, 16) 12t − 12
E 6 (10, 12) 12
E 7 (11, 13) 24t − 24
E 8 (13, 18) 12t − 12
E 9 (16, 18) 12t − 12

Let MOF1(t) be the first metal-organic framework of dimension t, for t ≥ 2. Then, by applying the closed neighbourhood degree-sum edge partitions given in Table 3 in Eqs. 1019, we get:

SK N c ( MOF 1 ( t ) ) = E 1 8 + 9 2 + E 2 9 + 11 2 + E 3 10 + 12 2 + E 4 10 + 16 2 + E 5 11 + 22 2 + E 6 12 + 16 2 + E 7 12 + 22 2 + E 8 14 + 22 2 + E 9 16 + 22 2 = 1 , 128 t 1 , 002

SK 1 N c (MOF 1 ( t ) ) = E 1 8 9 2 + E 2 9 11 2 + E 3 10 12 2 + E 4 10 16 2 + E 5 11 22 2 + E 6 12 16 2 + E 7 12 22 2 + E 8 14 22 2 + E 9 16 22 2 = 8 , 616 t 10 , 002

SK 2 N c ( MOF 1 ( t ) ) = E 1 8 + 9 2 2 + E 2 9 + 11 2 2 + E 3 10 + 12 2 2 + E 4 10 + 16 2 2 + E 5 11 + 22 2 2 + E 6 12 + 16 2 2 + E 7 12 + 22 2 2 + E 8 14 + 22 2 2 + E 9 16 + 22 2 2 = 18 , 096 t 21 , 003

mR N c ( MOF 1 ( t ) ) = E 1 1 9 + E 2 1 11 + E 3 1 12 + E 4 1 16 + E 5 1 22 + E 6 1 16 + E 7 1 22 + E 8 1 22 + E 9 1 22 = 513 t + 103 132

ISI N ( MOF 1 ( t ) ) = E 1 8 9 8 + 9 + E 2 9 11 9 + 11 + E 3 10 12 10 + 12 + E 4 10 16 10 + 16 + E 5 11 22 11 + 22 + E 6 12 16 12 + 16 + E 7 12 22 12 + 22 + E 8 14 22 14 + 22 + E 9 16 22 16 + 22 = 536.9791 t 472.4635

RSK N c ( MOF 1 ( t ) ) = E 1 2 8 + 9 + E 2 2 9 + 11 + E 3 2 10 + 12 + E 4 2 10 + 16 + E 5 2 11 + 22 + E 6 2 12 + 16 + E 7 2 12 + 22 + E 8 2 14 + 22 + E 9 2 16 + 22 + = 4.7074 t + 0.2870

RSK 1 N c ( MOF 1 ( t ) ) = E 1 2 8 9 + E 2 2 9 11 + E 3 2 10 12 + E 4 2 10 16 + E 5 2 11 22 + E 6 2 12 16 + E 7 2 12 22 + E 8 2 14 22 + E 9 2 16 22 = 0.6620 t + 0.5342

RSK 2 N c ( MOF 1 ( t ) ) = E 1 2 8 + 9 2 + E 2 2 9 + 11 2 + E 3 2 10 + 12 2 + E 4 2 10 + 16 2 + E 5 2 11 + 22 2 + E 6 2 12 + 16 2 + E 7 2 12 + 22 2 + E 8 2 14 + 22 2 + E 9 2 16 + 22 2 = 0.3150 t + 0.2775

RmR N c ( MOF 1 ( t ) ) = E 1 [ 9 ] + E 2 [ 11 ] + E 3 [ 12 ] + E 4 [ 16 ] + E 5 [ 22 ] + E 6 [ 16 ] + E 7 [ 22 ] + E 8 [ 22 ] + E 9 [ 22 ] = 1 , 368 t 1 , 260

RISI N c ( MOF 1 ( t ) ) = E 1 8 + 9 8 9 + E 2 9 + 11 9 11 + E 3 10 + 12 10 12 + E 4 10 + 16 10 16 + E 5 11 + 22 11 22 + E 6 12 + 16 12 16 + E 7 12 + 22 12 22 + E 8 14 + 22 14 22 + E 9 16 + 22 16 22 = 9.8935 t + 0.1903

Let MOF2(t) be the second metal-organic framework of dimension t, for t ≥ 2. Then, by applying the closed neighbourhood degree-sum edge partitions given in Table 4 in Eqs. 1019, we get:

SK N c ( MOF 2 ( t ) ) = E 1 8 + 9 2 + E 2 9 + 9 2 + E 3 9 + 11 2 + E 4 9 + 12 2 + E 5 9 + 16 2 + E 6 10 + 12 2 + E 7 11 + 13 2 + E 8 13 + 18 2 + E 9 16 + 18 2 = 948 t + 172

SK 1 N c ( MOF 2 ( t ) ) = E 1 8 9 2 + E 2 9 9 2 + E 3 9 11 2 + E 4 9 12 2 + E 5 9 16 2 + E 6 10 12 2 + E 7 11 13 2 + E 8 13 18 2 + E 9 16 18 2 = 6 , 306 t + 237

SK 2 N c ( MOF 2 ( t ) ) = E 1 8 + 9 2 2 + E 2 9 + 9 2 2 + E 3 9 + 11 2 2 + E 4 9 + 12 2 2 + E 5 9 + 16 2 2 + E 6 10 + 12 2 2 + E 7 11 + 13 2 2 + E 8 13 + 18 2 2 + E 9 16 + 18 2 2 = 12 , 882 t + 454

mR N c ( MOF 2 ( t ) ) = E 1 1 9 + E 2 1 9 + E 3 1 11 + E 4 1 12 + E 5 1 16 + E 6 1 12 + E 7 1 13 + E 8 1 18 + E 9 1 18 = 51 , 690 t + 37 , 321 10 , 296

ISI N c ( MOF 2 ( t ) ) = E 1 8 9 8 + 9 + E 2 9 9 9 + 9 + E 3 9 11 9 + 11 + E 4 9 12 9 + 12 + E 5 9 16 9 + 16 + E 6 10 12 10 + 12 + E 7 11 13 11 + 13 + E 8 13 18 13 + 18 + E 9 16 18 16 + 18 = 463.7477 t + 86.3579

RSK N c ( MOF 2 ( t ) ) = E 1 2 8 + 9 + E 2 2 9 + 9 + E 3 2 9 + 11 + E 4 2 9 + 12 + E 5 2 9 + 16 + E 6 2 10 + 12 + E 7 2 11 + 13 + E 8 2 13 + 18 + E 9 2 16 + 18 = 5.6401 t + 3.7839

RSK 1 N c ( MOF 2 ( t ) ) = E 1 2 8 9 + E 2 2 9 9 + E 3 2 9 11 + E 4 2 9 12 + E 5 2 9 16 + E 6 2 10 12 + E 7 2 11 13 + E 8 2 13 18 + E 9 2 16 18 = 0.9307 t + 0.9504

RSK 2 N c ( MOF 2 ( t ) ) = E 1 2 8 + 9 2 + E 2 2 9 + 9 2 + E 3 2 9 + 11 2 + E 4 2 9 + 12 2 + E 5 2 9 + 16 2 + E 6 2 10 + 12 2 + E 7 2 11 + 13 2 + E 8 2 13 + 18 2 + E 9 2 16 + 18 2 = 0.4549 t + 0.4736

RmR N c ( MOF 2 ( t ) ) = E 1 [ 9 ] + E 2 [ 9 ] + E 3 [ 11 ] + E 4 [ 12 ] + E 5 [ 16 ] + E 6 [ 12 ] + E 7 [ 13 ] + E 8 [ 18 ] + E 9 [ 18 ] = 1 , 068 t + 174

RISI N c ( MOF 2 ( t ) ) = E 1 8 + 9 8 9 + E 2 9 + 9 9 9 + E 3 9 + 11 9 11 + E 4 9 + 12 9 12 + E 5 9 + 16 9 16 + E 6 10 + 12 10 12 + E 7 11 + 13 11 13 + E 8 13 + 18 13 18 + E 9 16 + 18 16 18 = 11.5420 t + 7.5864

5 Conclusion

Computing various topological indices of chemical graphs allows for the investigation of chemical molecules and research of how the indices connect to the physiochemical properties. In this article, we determined the cardinality of the reduced reverse degree-based and closed neighbourhood degree-sum edge partitions corresponding to two metal-organic frameworks, MOF1(t) and MOF2(t), respectively. These edge partitions were used to compute the reduced reverse degree-based topological indices and some closed neighbourhood degree sum-based topological indices for MO1(t) and MO2(t), respectively. As future work, we plan to apply these descriptors to various transformations of metal-organic frameworks and to analyse the physico-chemical properties of the metal-organic frameworks like electrochemical stability and flexibility.

Acknowledgment

The authors are indebted to the anonymous referees for their valuable comments to improve the original version of this article.

  1. Funding information: The authors state no funding involved.

  2. Author contributions: Vignesh Ravi: writing – original draft, writing – review and editing, methodology, and formal computations; Kalyani Desikan: writing – original draft and writing – review and editing.

  3. Conflict of interest: The authors state no conflict of interest.

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Received: 2021-12-31
Accepted: 2022-05-09
Published Online: 2022-07-18

© 2022 Vignesh Ravi and Kalyani Desikan, published by De Gruyter

This work is licensed under the Creative Commons Attribution 4.0 International License.

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