Abstract
Rolling circle amplification (RCA) catalyzed by ϕ29 DNA polymerase offers a simple method for DNA amplification in the presence of a circular DNA template and its complimentary primer. RCA continuously produces long single-strand DNA using the strand displacement activity of polymerase during DNA synthesis. This property allows one to monitor the progress of a reaction by means of electrophoresis or fluorescence measurements, and has eventually allowed the application of RCA to signal increments in the sensing of a variety of molecular species. Originally, RCA was successfully applied for the detection of specific DNA, such as single nucleotide polymorphisms. In addition, the conjugation of an antibody with a primer achieves efficient signal enhancement in antigen detection, and mRNA can also be specifically detected. Since RCA is a carry-over contamination-resistant, cost-effective, and user-friendly method of DNA amplification, RCA could be a universal technology for biosensing in fields of medical- and food-related industries.
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S. Kwok and R. Higuchi, Nature, 1989, 339, 237.
J. Baner, M. Nilsson, M. Mendel-Hartvig, and U. Landegren, Nucleic Acids Res., 1998, 26, 5073.
P. M. Lizardi, X. Huang, Z. Zhu, P. Bray-Ward, D. C. Thomas, and D. C. Ward, Nat. Genet., 1998, 19, 225.
M. Stougaard, S. Juul, F. F. Andersen, and B. R. Knudsen, Integr. Biol. (Camb), 2011, 3, 982.
L. Blanco, A. Bernad, J. M. Lazaro, G. Martin, C. Garmendia, and M. Salas, J. Biol. Chem., 1989, 264, 8935.
A. Fire and S. Q. Xu, Proc. Natl. Acad. Sci. U. S. A., 1995, 92, 4641.
D. Liu, S. L. Daubendiek, M. A. Zillman, K. Ryan, and E. T. Kool, J. Am. Chem. Soc., 1996, 118, 1587.
B. Schweitzer, S. Roberts, B. Grimwade, W. Shao, M. Wang, Q. Fu, Q. Shu, I. Laroche, Z. Zhou, V. T. Tchernev, J. Christiansen, M. Velleca, and S. F. Kingsmore, Nat. Biotechnol., 2002, 20, 359.
L. Mahmoudian, J. Melin, M. R. Mohamadi, K. Yamada, M. Ohta, N. Kaji, M. Tokeshi, M. Nilsson, and Y. Baba, Anal. Sci., 2008, 24, 327.
K. Sato, A. Tachihara, B. Renberg, K. Mawatari, K. Sato, Y. Tanaka, J. Jarvius, M. Nilsson, and T. Kitamori, Lab Chip, 2010, 10, 1262.
P. J. Asiello and A. J. Baeumner, Lab Chip, 2011, 11, 1420.
M. Nilsson, H. Malmgren, M. Samiotaki, M. Kwiatkowski, B. P. Chowdhary, and U. Landegren, Science, 1994, 265, 2085.
C. Larsson, J. Koch, A. Nygren, G. Janssen, A. K. Raap, U. Landegren, and M. Nilsson, Nat. Methods, 2004, 1, 227.
C. Larsson, I. Grundberg, O. Soderberg, and M. Nilsson, Nat. Methods, 2010, 7, 395.
N. Sasaki, A. Isu, R. Ishii, and K. Sato, Anal. Sci., 2012, 28, 537.
C. Lin, M. Xie, J. J. Chen, Y. Liu, and H. Yan, Angew. Chem., Int. Ed. Engl., 2006, 45, 7537.
T. Blondal, A. Thorisdottir, U. Unnsteinsdottir, S. Hjorleifsdottir, A. Aevarsson, S. Ernstsson, O. H. Fridjonsson, S. Skirnisdottir, J. O. Wheat, A. G. Hermannsdottir, S. T. Sigurdsson, G. O. Hreggvidsson, A. V. Smith, and J. K. Kristjansson, Nucleic Acids Res., 2005, 33, 135.
H. Kuhn and M. D. Frank-Kamenetskii, Nucleic Acids Res., 2008, 36, e40.
T. Murakami, J. Sumaoka, and M. Komiyama, Nucleic Acids Res., 2009, 37, e19.
T. Kobori, A. Matsumoto, H. Takahashi, and S. Sugiyama, Anal. Sci., 2009, 25, 1381.
H. Takahashi, A. Matsumoto, S. Sugiyama, and T. Kobori, Anal. Biochem., 2010, 401, 242.
F. Akter, M. Mie, and E. Kobatake, Anal. Biochem., 2011, 416, 174.
F. Akter, M. Mie, S. Grimm, P. A. Nygren, and E. Kobatake, Anal. Chem., 2012, 84, 5040.
B. Schweitzer, S. Wiltshire, J. Lambert, S. O′Malley, K. Kukanskis, Z. Zhu, S. F. Kingsmore, P. M. Lizardi, and D. C. Ward, Proc. Natl. Acad. Sci. U. S. A., 2000, 97, 10113.
W. Van Dessel, F. Vandenbussche, M. Staes, N. Goris, and K. De Clercq, J. Virol. Methods, 2008, 147, 151.
K. Kitada, S. Oka, S. Kimura, K. Shimada, T. Serikawa, J. Yamada, H. Tsunoo, K. Egawa, and Y. Nakamura, J. Clin. Microbiol., 1991, 29, 1985.
J. E. Olsen, S. Aabo, W. Hill, S. Notermans, K. Wernars, P. E. Granum, T. Popovic, H. N. Rasmussen, and O. Olsvik, Int. J. Food Microbiol., 1995, 28, 1.
A. K. Bej, W. Y. Ng, S. Morgan, D. D. Jones, and M. H. Mahbubani, Mol. Biotechnol., 1996, 5, 1.
G. E. Sheridan, C. I. Masters, J. A. Shallcross, and B. M. MacKey, Appl. Environ. Microbiol., 1998, 64, 1313.
C. W. Dieffenbach and G. S. Dveksler, PCR Methods Appl., 1993, 3, S2.
K. H. Roux, PCR Methods Appl., 1995, 4, S185.
H. J. Burkardt, Clin. Chem. Lab. Med., 2000, 38, 87.
V. C. Lombardi, F. W. Ruscetti, J. Das Gupta, M. A. Pfost, K. S. Hagen, D. L. Peterson, S. K. Ruscetti, R. K. Bagni, C. Petrow-Sadowski, B. Gold, M. Dean, R. H. Silverman, and J. A. Mikovits, Science, 2009, 326, 585.
E. Sato, R. A. Furuta, and T. Miyazawa, Retrovirology, 2010, 7, 110.
B. Alberts, Science, 2011, 334, 1636.
S. Philipp, H. P. Huemer, E. U. Irschick, and C. Gassner, Transfus. Med. Hemother., 2010, 37, 21.
H. Niimi, M. Mori, H. Tabata, H. Minami, T. Ueno, S. Hayashi, and I. Kitajima, J. Clin. Microbiol., 2011, 49, 3316.
P. Patel, J. A. Garson, K. I. Tettmar, S. Ancliff, C. McDonald, T. Pitt, J. Coelho, and R. S. Tedder, Transfusion, 2011, 21, 1537.
A. Kornberg and T. Baker, DNA Replication, Thesis Type, University, San Francisco, CA, 1992.
S. P. Jonstrup, J. Koch, and J. Kjems, RNA, 2006, 12, 1747.
H. Takahashi, K. Yamamoto, T. Ohtani, and S. Sugiyama, BioTechniques, 2009, 47, 609.
M. Stougaard, J. S. Lohmann, M. Zajac, S. Hamilton- Dutoit, and J. Koch, BMC Biotechnol., 2007, 7, 69.
Y. Cheng, X. Zhang, Z. Li, X. Jiao, Y. Wang, and Y. Zhang, Angew. Chem., Int. Ed. Engl., 2009, 48, 3268.
A. Lagunavicius, E. Merkiene, Z. Kiveryte, A. Savaneviciute, V. Zimbaite-Ruskuliene, T. Radzvilavicius, and A. Janulaitis, RNA, 2009, 15, 765.
N. Li, C. Jablonowski, H. Jin, and W. Zhong, Anal. Chem., 2009, 81, 4906.
Y. Zhou, Q. Huang, J. Gao, J. Lu, X. Shen, and C. Fan, Nucleic Acids Res., 2010, 38, e156.
Y. Mashimo, M. Mie, S. Suzuki, and E. Kobatake, Anal. Bioanal. Chem., 2011, 401, 221.
T. Murakami, J. Sumaoka, and M. Komiyama, Nucleic Acids Res., 2012, 40, e22.
P. M. Griffin and R. V. Tauxe, Epidemiol. Rev., 1991, 13, 60.
T. Murakami, J. Sumaoka, and M. Komiyama, Epicentre Forum Newsletter, 2009, 16, 7.
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Kobori, T., Takahashi, H. Expanding Possibilities of Rolling Circle Amplification as a Biosensing Platform. ANAL. SCI. 30, 59–64 (2014). https://doi.org/10.2116/analsci.30.59
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DOI: https://doi.org/10.2116/analsci.30.59