Data and code to reproduce all analyses described in the paper "NicheNet: Modeling intercellular communication by linking ligands to target genes"

Here you can find a directory containing the data and code to reproduce all analyses described in the NicheNet paper (https://www.nature.com/articles/s41592-019-0667-5). 

The subdirectories contain following information:
*networks_final: data and scripts to create the integrated ligand-receptor, signaling and gene regulatory networks
*evaluation_final: data and scripts to validate the NicheNet model. Includes scripts for optimization and characterization of data sources as well.
*application_final: data and scripts used to apply NicheNet to single-cell data from Puram et al. and Medaglia et al.
*data_nichenet_final: final networks, models and expression datasets